At a glance, I can notice a few things. You have a lot of int for your gear level, and too much mp5. I'm willing to bet you finish most fights with a whole lot of mana leftover. This is not ideal. Secondly, your gems. We don't gem for int anymore, all that changed in 3.2. I can't speak for every shaman in the world and I don't claim to be the best, but most of us are gemming haste. Your haste is very low and this might even result in your heals getting sniped a lot, although not necessarily. Most of your gear is crit/mp5, and blizzard loves to throw those stats at us, but try to pick up haste gear when you can, and drop mp5 at every oppotunity. Personally, I use hybrid gems and get the socket bonuses but that's just my choice.
What about your raid comp? What other healers are you running with?
As far as your spec, I would drop totemic focus and put those points into improved healing wave. You have 3/3 healing way so I assume you do use healing wave, and taking .3 seconds off is much more helpful than a reduced mana cost on totems you only drop once per fight (usually). I don't use healing wave very much, and when I do it's only when tidal waves is up.
I'm not sure that all this can account for your poor HPS. Remember that healing meters are normally bs, and healing the right person at the right time is much more important. Resto Druids will beat you on twin valks, so don't worry about it. Without looking at a parse I can't give you much more advice. If people are actually dying due to your lack ouf output then you may be making bad spell choices in those circumstances. In some fights chain heal is great but in others you'll need to whack-a-mole with Riptide and LHW. I've seen many shamans make poor choices in the middle of a fight, even myself from time to time. If you can provide a parse, maybe we can provide a better diagnosis? In the meantime, drop some mp5 and stack haste.
Here's my armory if you're interested.
The World of Warcraft Armory
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